A boxplot to visualise the distribution of values within a subset of features.
Usage
DatasetExperiment_boxplot(
factor_name,
by_sample = TRUE,
per_class = TRUE,
number = 50,
...
)Arguments
- factor_name
(character) The name of a sample-meta column to use.
- by_sample
(logical) Plot by sample. Allowed values are limited to the following:
"TRUE": The data is plotted across features for a subset of samples."FALSE": The data is plotted across samples for a subset of features.
The default is
TRUE.- per_class
(logical) Plot per class. Allowed values are limited to the following:
"TRUE": The data is plotted for each class."FALSE": The data is plotted for all samples.
The default is
TRUE.- number
(numeric, integer) The number of features/samples plotted. The default is
50.- ...
Additional slots and values passed to
struct_class.
Value
A
DatasetExperiment_boxplot
object. This object has no output slots.
See chart_plot in the struct package to plot this chart object.
struct object
Inheritance
A DatasetExperiment_boxplot object inherits the following struct classes: [DatasetExperiment_boxplot] >> [chart] >> [struct_class]
Examples
M = DatasetExperiment_boxplot(
factor_name = "V1",
by_sample = FALSE,
per_class = FALSE,
number = 50)
D = MTBLS79_DatasetExperiment()
C = DatasetExperiment_boxplot(factor_name='Class',number=10,per_class=FALSE)
chart_plot(C,D)
#> Warning: Removed 585 rows containing non-finite outside the scale range
#> (`stat_boxplot()`).
