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Filter by sample meta data

Source: R/filter_smeta_class.R
filter_smeta.Rd

The data is filtered by so that the named levels of a factor are included/excluded from the dataset.

Usage

filter_smeta(mode = "include", levels, factor_name, ...)

Arguments

mode

(character) Mode of action. Allowed values are limited to the following:

  • "include": Samples in the specified levels are retained.

  • "exclude": Samples in the specified levels are excluded.

The default is "include".

levels

(character) The level name(s) for filtering.

factor_name

(character) The name of a sample-meta column to use.

...

Additional slots and values passed to struct_class.

Value

A filter_smeta object with the following output slots:

filtered(DatasetExperiment)

Inheritance

A filter_smeta object inherits the following struct classes:

[filter_smeta] >> [model] >> [struct_class]

Examples

M = filter_smeta(
      mode = "include",
      levels = character(0),
      factor_name = "V1")

D = MTBLS79_DatasetExperiment()
M = filter_smeta(mode='exclude',levels='QC',factor_name='QC')
M = model_apply(M,D)