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Missing value boxplots

Source: R/dataset_chart_classes.R
mv_boxplot.Rd

Boxplots of the number of missing values per sample/feature.

Usage

mv_boxplot(
  label_outliers = TRUE,
  by_sample = TRUE,
  factor_name,
  show_counts = TRUE,
  ...
)

Arguments

label_outliers

(logical) Label outliers. Allowed values are limited to the following:

  • "TRUE": Sample labels for potential outliers are displayed on the plot.

  • "FALSE": Sample labels are not included on the plot.

The default is TRUE.

by_sample

(logical) Plot by sample or by feature. Allowed values are limited to the following:

  • "TRUE": Missing values are plotted per sample.

  • "FALSE": Missing values are plotted per feature.

The default is TRUE.

factor_name

(character) The name of a sample-meta column to use.

show_counts

(logical) Show counts. Allowed values are limited to the following:

  • "TRUE": The number of samples for each box is displayed.

  • "FALSE": The number of samples for each box is not displayed.

The default is TRUE.

...

Additional slots and values passed to struct_class.

Value

A mv_boxplot object. This object has no output slots. See chart_plot in the struct package to plot this chart object.

Inheritance

A mv_boxplot object inherits the following struct classes:

[mv_boxplot] >> [chart] >> [struct_class]

Examples

M = mv_boxplot(
      label_outliers = FALSE,
      by_sample = FALSE,
      factor_name = "V1",
      show_counts = FALSE)

D = MTBLS79_DatasetExperiment()
C = mv_boxplot(factor_name='Class')
chart_plot(C,D)