Skip to contents

Import CompDB source

Source: R/CompoundDb_source_class.R
CompoundDb_source.Rd

Imports the compounds table of a CompDB source as an annotation_source.

Usage

CompoundDb_source(source, tag = "cdb", ...)

Arguments

source

(ANY) The source of annotation data.

tag

(character) A (short) character string that is used to represent this source e.g. in column names or source columns when used in a workflow. The default is "cdb".

...

Additional slots and values passed to struct_class.

Value

A CompoundDb_source object. This object has no output slots.

Details

This object makes use of functionality from the following packages:

  • CompoundDb

Inheritance

A CompoundDb_source object inherits the following struct classes:

[CompoundDb_source] -> [annotation_source] -> [struct_class]

References

Rainer J, Vicini A, Salzer L, Stanstrup J, Badia J, Neumann S, Stravs M, Verri Hernandes V, Gatto L, Gibb S, Witting M (2022). "A Modular and Expandable Ecosystem for Metabolomics Data Annotation in R." Metabolites, 12, 173. doi:10.3390/metabo12020173 https://doi.org/10.3390/metabo12020173, https://www.mdpi.com/2218-1989/12/2/173.

Examples

M <- CompoundDb_source(
        tag = character(0),
        data = data.frame(),
        source = "ANY")