Search the LipidMaps database using the API
Usage
lipidmaps_lookup(
query_column,
context,
context_item,
output_item = "all",
suffix = "_lipidmaps",
...
)
Arguments
- query_column
(character) The name of a column in the annotation table containing values to search in the api call.
- context
(character) The search API context. Must be one of "compound", "gene", or "protein".
- context_item
(character) The context item being searched. See https://lipidmaps.org/resources/rest for details.
- output_item
(character) The names of the columns to return from the results of the search. See https://lipidmaps.org/resources/rest for details. The default is
"all"
.- suffix
(character) A suffix appended to all column names in the returned result. The default is
"_lipidmaps"
.- ...
Additional slots and values passed to
struct_class
.
Value
A lipidmaps_lookup
object with the following
output
slots:
updated | (annotation_source) The annotation_source after adding data returned by the API. |
Inheritance
A lipidmaps_lookup
object inherits the following struct
classes:
[lipidmaps_lookup]
-> [rest_api]
-> [model]
-> [struct_class]
See also
Other REST API's:
classyfire_lookup
,
kegg_lookup
,
mwb_compound_lookup
,
rest_api
Examples
M = lipidmaps_lookup( query_column = character(0), output_item =
"input", context = "compound", context_item = character(0), base_url
= "https://www.lipidmaps.org/rest", url_template =
"<base_url>/<context>/<context_item>/<query_column>/<output_item>/json",
cache = NULL, status_codes = list(), delay = 0.5, suffix =
"_rest_api")