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mwb_refmet_database

Source: R/mwb_refmet_database_class.R
mwb_refmet_database.Rd

Imports the Metabolomics Workbench refmet database.

Usage

mwb_refmet_database(bfc = NULL, ...)

Arguments

bfc

(character) BiocFileCache is used to cache database locally and prevent unnecessary downloads. If a path is provided then BiocFileCache will use this location. If NULL it will use the default location (see BiocFileCache() for details). The default is NULL.

...

Additional slots and values passed to struct_class.

Value

A mwb_refmet_database object. This object has no output slots.

Details

This object makes use of functionality from the following packages:

  • BiocFileCache

  • httr

  • plyr

Inheritance

A mwb_refmet_database object inherits the following struct classes:

[mwb_refmet_database] -> [annotation_database] -> [annotation_source] -> [struct_class]

References

Shepherd L, Morgan M (2024). BiocFileCache: Manage Files Across Sessions. R package version 2.10.2.

Wickham H (2023). httr: Tools for Working with URLs and HTTP. R package version 1.4.7, https://CRAN.R-project.org/package=httr.

Wickham H (2011). "The Split-Apply-Combine Strategy for Data Analysis." Journal of Statistical Software, 40(1), 1-29. https://www.jstatsoft.org/v40/i01/.

Examples

M = mwb_refmet_database( bfc = character(0), tag = character(0), data
= data.frame(id=NA), source = "ANY")