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Read a database

Source: R/generics.R, R/annotation_database_class.R, R/AnnotationDb_database.R, and 9 more
read_database.Rd

Reads an annotation_database and returns the data.frame.

Usage

read_database(obj, ...)

# S4 method for class 'annotation_database'
read_database(obj)

# S4 method for class 'AnnotationDb_database'
read_database(obj)

# S4 method for class 'BiocFileCache_database'
read_database(obj)

# S4 method for class 'MTox700plus_database'
read_database(obj)

# S4 method for class 'PathBank_metabolite_database'
read_database(obj)

# S4 method for class 'excel_database'
read_database(obj)

# S4 method for class 'github_file'
read_database(obj)

# S4 method for class 'mwb_refmet_database'
read_database(obj)

# S4 method for class 'rdata_database'
read_database(obj)

# S4 method for class 'rds_database'
read_database(obj)

# S4 method for class 'sqlite_database'
read_database(obj)

Arguments

obj

An annotation_database object

...

additional database specific inputs

Value

A data.frame

Examples

M <- rds_database(tempfile())
df <- read_database(M)