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AnnotationDb database

Source: R/AnnotationDb_database.R
AnnotationDb_database.Rd

Retrieve a table from an AnnotationDb package.

Usage

AnnotationDb_database(source, table, ...)

Arguments

source

(character) The name of an AnnotationDb package to import the specified table from. Note the package should already be installed.

table

(character) The name of a table to import from the specified source AnnotationDb package.

...

Additional slots and values passed to struct_class.

Value

A AnnotationDb_database object. This object has no output slots.

Details

This object makes use of functionality from the following packages:

  • AnnotationDbi

Inheritance

A AnnotationDb_database object inherits the following struct classes:

[AnnotationDb_database] -> [annotation_database] -> [annotation_source] -> [struct_class]

References

Pagès H, Carlson M, Falcon S, Li N (2023). AnnotationDbi: Manipulation of SQLite-based annotations in Bioconductor. doi:10.18129/B9.bioc.AnnotationDbi https://doi.org/10.18129/B9.bioc.AnnotationDbi, R package version 1.64.1, https://bioconductor.org/packages/AnnotationDbi.

See also

AnnotationDbi::AnnotationDb

Other annotation databases: GO_database, annotation_database, annotation_source, excel_database, rdata_database, rds_cache, rds_database

Examples

M <- AnnotationDb_database(
        table = character(0),
        tag = character(0),
        data = data.frame(),
        source = character(0))