An annotation_database is an annotation_source()
where the imported data.frame contains meta data for annotations. For
example it might be a table of molecular identifiers, associated
pathways etc.
Usage
annotation_database(data = data.frame(), tag = "", ...)Arguments
- data
(data.frame, NULL) A data.frame of annotation data. The default is
data.frame().- tag
(character) A (short) character string that is used to represent this source e.g. in column names or source columns when used in a workflow. The default is
"".- ...
Additional slots and values passed to
struct_class.
Inheritance
A annotation_database object inherits the following struct
classes: [annotation_database] -> [annotation_source] -> [struct_class]
See also
Other annotation databases:
AnnotationDb_database,
GO_database,
annotation_source,
excel_database,
rdata_database,
rds_cache,
rds_database
Other annotation sources:
annotation_table,
cd_source,
ls_source,
mspurity_source
Examples
M <- annotation_database(
tag = character(0),
data = data.frame(),
source = "ANY")